Project publications
Perspectives on improving photosynthesis to increase crop yield
Roberta Croce, Elizabete Carmo-Silva, Young B Cho, Maria Ermakova, Jeremy Harbinson, Tracy Lawson, Alistair J McCormick, Krishna K Niyogi, Donald R Ort, Dhruv Patel-Tupper, Paolo Pesaresi, Christine Raines, Andreas P M Weber, Xin-Guang Zhu
Transcriptomic response to nitrogen availability reveals signatures of adaptive plasticity during tetraploid wheat domestication
Alice Pieri, Romina Beleggia, Tania Gioia, Hao Tong, Valerio Di Vittori, Giulia Frascarelli, Elena Bitocchi, Laura Nanni, Elisa Bellucci, Fabio Fiorani, Nicola Pecchioni, Stefania Marzario, Concetta De Quattro, Antonina Rita Limongi, Pasquale De Vita, Marzia Rossato, Ulrich Schurr, Jacques L David, Zoran Nikoloski, Roberto Papa
Purification of Rubisco from Leaves
Joana Amaral, Ana K. M. Lobo, Elizabete Carmo-Silva & Douglas J. Orr
Genetic variation in photosynthesis: many variants make light work
Johannes Kromdijk, Alistair J McCormick
Prediction of metabolite–protein interactions based on integration of machine learning and constraint-based modeling
Fayaz Soleymani Babadi, Zahra Razaghi-Moghadam, Fatemeh Zare-Mirakabad, Zoran Nikoloski
Radiometric determination of rubisco activation state and quantity in leaves
Catherine J. Ashton, Rhiannon Page,
Ana K.M. Lobo, Joana Amaral, Joao A. Siqueira, Douglas J. Orr, Elizabete Carmo-Silva
Excised leaves show limited and species-specific effects on photosynthetic parameters across crop functional types
John N Ferguson, Tamanna Jithesh, Tracy Lawson, Johannes Kromdijk
Regulation of Rubisco activity in crops
Solanum pennellii (LA5240) backcross inbred lines (BILs) for high resolution mapping in tomato
Shai Torgeman, Tzili Pleban, Yael Goldberg, Paola Ferrante, Giuseppe Aprea, Giovanni Giuliano, Yoav Yichie, Josef Fisher, Itay Zemach, Amit Koch, Edan Rochsar, Matan Oved, Kfir Bandel, Dani Zamir
Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli
Rudan Xu, Zahra Razaghi-Moghadam, Zoran Nikoloski
Combination of network and molecule structure accurately predicts competitive inhibitory interactions
Zahra Razaghi-Moghadama, Ewelina M. Sokolowskac, Marcin A. Sowad ∙ Aleksandra Skiryczc, Zoran Nikoloski
Epistatic QTLs for yield heterosis in tomato
Shai Torgeman, Dani Zamir
Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes
Zahra Razaghi-Moghadam, Fayaz Soleymani Babadi, Zoran Nikoloski
Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism
Sandra Correa Córdoba, Hao Tong, Asdrúbal Burgos, Feng Zhu, Saleh Alseekh, Alisdair R. Fernie & Zoran Nikoloski
Maximizing multi-reaction dependencies provides more accurate and precise predictions of intracellular fluxes than the principle of parsimony
Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale
Marius Arend, David Zimmer, Rudan Xu, Frederik Sommer, Timo Mühlhaus & Zoran Nikoloski
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco
David Zimmer , Corné Swart, Alexander Graf, Stéphanie Arrivault, Michael Tillich, Sebastian Proost, Zoran Nikoloski , Mark Stitt , Ralph Bock , Timo Mühlhaus and Alix Boulouis
Cytonuclear interactions modulate the plasticity of photosynthetic rhythmicity and growth in wild barley
Lalit Dev Tiwari, Eyal Bdolach, Manas Ranjan Prusty, Schewach Bodenheimer, Avital Be’ery, Adi Faigenboim‐Doron, Eiji Yamamoto, Klára Panzarová, Khalil Kashkush, Noam Shental, Eyal Fridman
Crops under past diversification and ongoing climate change: more than just selection of nuclear genes for flowering
Lalit Dev Tiwari, Ayelet Kurtz-Sohn, Eyal Bdolach, Eyal Fridman
Breeding by intervening: Exploring the role of associations and deliberation in consumer acceptance of different breeding techniques
Paul Nales; Arnout Fischer
Improving plant productivity by re-tuning the regeneration of RuBP in the Calvin–Benson–Bassham cycle
Christine A. Raines
Genetics as a key to improving crop photosynthesis
Tom P.J.M Theeuwen, Louise L. Logie; Jeremy Harbinson; Mark G. M. Aarts
Genetic loci mediating circadian clock output plasticity and crop productivity under barley domestication
M. R. Prusty, E. Bdolach; E. Yamamoto; L. D. Tiwari; R. Silberman; A. Doron-Faigenbaum; J. L. Neyhart; D. Bonfil; K. Kashkush; K. Pillen; K. P. Smith; E. Fridman
Data integration across conditions improves turnover number estimates and metabolic predictions
Wendering Philipp; Arend Marius; Razaghi-Moghadam Zahra; Nikoloski Zoran
Relative flux trade-offs and optimization of metabolic network functionalities
Hashemi Seirna; Razaghi-Moghadam Zahra; Laitinen Roosa A.E; Nikoloski Zoran
From data to knowledge – big data needs stewardship, a plant phenomics perspective
Arend Daniel; Psaroudakis Dennis; Memon Junaid Altaf; Rey-Mazon Elena; Schuler Danuta; Szymanski Jedrzej Jakub; Scholz Uwe; Junker Astrid; Lange Mattias
Improving C3 photosynthesis by exploiting natural genetic variation: Hirschfeldia incana as a model species
Taylor Graham; Garassino Francesco; Aarts Mark; Harbinson Jeremy;
The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency
Garassino Francesco; Wijfjes Raul; Boesten Rene; Marquez Francisca Reyes; Becker Frank; Clapero Vittoria; van den Hatert Iris; Holmer Rens; Schranz M. Eric; Harbinson Jeremy; de Ridder Dick; Smit Sandra; Aarts Mark;
Related publications and links
Status of the World’s Soil Resources
Main report
EC study on new genomic techniques
Economic and Food Security Impacts of Agricultural Input Reduction Under the European Union Green Deal’s Farm to Fork and Biodiversity Strategies
Natural plant growth and development achieved in the IPK PhenoSphere by dynamic environment simulation
